Tissue morphogenesis: methods and protocols / ed. by C.M.Nelson. - New York: Springer Science+Business Media: Humana press, 2015. - xii, 351 p.: ill. - (Methods in molecular biology; 1189) (Springer protocols). - Bibliogr. at the end of the chapters. - Ind.: p.351. - ISBN 978-1-4939-1163-9; ISSN 1064-3745 Шифр: (Pr 852/N 1189) 02  Место хранения:   02 | Отделение ГПНТБ СО РАН | Новосибирск

Оглавление / Contents

Preface ......................................................... v Contributors ................................................... ix Part I. Imaging Morphogenesis 1 Probing Regional Mechanical Properties of Embryonic Tissue Using Microindentation and Optical Coherence Tomography ...... 3 Benjamen A. Filas, Gang Xu, and Larry A. Taber 2 Hemodynamic Flow Visualization of Early Embryonic Great Vessels Using μPIV .......................................... 17 Selda Goktas, Chia-Yuan Chen, William J. Kowalski, and Kerem Pekkan 3 Using Correlative Light and Electron Microscopy to Study Zebrafish Vascular Morphogenesis ............................ 31 Jacky G. Goetz, Fabien Monduc, Yannick Schwab, and Julien Vermot 4 Micro/Nano-Computed Tomography Technology for Quantitative Dynamic, Multi-scale Imaging of Morphogenesis ............... 47 Chelsea L. Gregg, Andrew K. Recknagel, and Jonathan T. Butcher 5 Imaging the Dorsal-Ventral Axis of Live and Fixed Drosophila melanogaster Embryos ............................. 63 Sophia N. Carrell and Gregory T. Reeves 6 Light Sheet-Based Imaging and Analysis of Early Embryogenesis in the Fruit Fly .............................. 79 Khaled Khairy, William C. Lemon, Fernando Amat, and Philipp J. Keller 7 Quantitative Image Analysis of Cell Behavior and Molecular Dynamics During Tissue Morphogenesis ........................ 99 Chun Yin Bosco Leung and Rodrigo Fernandez-Gonzalez 8 A Multiplex Fluorescent In Situ Hybridization Protocol for Clonal Analysis of Drosophila Oogenesis .................... 115 Lily S. Cheung and Stanislav Shvartsman 9 Active Cell and ECM Movements During Development ........... 123 Anastasiia Aleksandrova, Brenda J. Rongish, Charles D. Little, and András Czirók Part II. Culture Models of Morphogenesis 10 3D Culture Assays of Murine Mammary Branching Morphogenesis and Epithelial Invasion ..................................... 135 Kim-Vy Nguyen-Ngoc, Eliah R. Shamir, Robert J. Huebner, Jennifer N. Beck, Kevin J. Cheung, and Andrew J. Ewald 11 Culture of Mouse Embryonic Foregut Explants ................. 163 Felicia Chen and Wellington V. Cardoso 12 Investigating Human Vascular Tube Morphogenesis and Maturation Using Endothelial Cell-Pericyte Co-cultures and a Doxycycline-Inducible Genetic System in 3D Extracellular Matrices .................................................... 171 Stephanie L.K. Bowers, Chun-Xia Meng, Matthew T. Davis, and George E. Davis 13 Three-Dimensional Traction Force Microscopy of Engineered Epithelial Tissues .......................................... 191 Alexandra S. Piotrowski, Victor D. Varner, Nikolce Gjorevski, and Celeste M. Nelson Part III. Manipulating Cells and Tissues In Vivo 14 Probing Cell Mechanics with Subcellular Laser Dissection of Actomyosin Networks in the Early Developing Drosophila Embryo ..................................................... 209 M. Rauzi and P.-F. Lenne 15 UV Laser Ablation to Measure Cell and Tissue-Generated Forces in the Zebrafish Embryo In Vivo and Ex Vivo ......... 219 Michael Smutny, Martin Behrndt, Pedro Campinho, Verena Ruprecht, and Carl-Philipp Heisenberg 16 Measurement of Intercellular Cohesion by Tissue Surface Tensiometry ................................................ 237 Ramsey A. Foty 17 Quail-Chick Chimeras and Eye Development ................... 255 Sinu Jasrapuria Agrawal and Peter Y. Lwigale Part IV. Emerging Models of Tissue Morphogenesis 18 Studying Epithelial Morphogenesis in Dictyostelium ......... 267 Daniel J. Dickinson, W. James Nelson, and William I. Weis 19 Primary Cell Cultures of Regenerating Holothurian Tissues .. 283 Samir A. Bello, Ricardo J. Abreu-Irizarry, and José E. García-Arrarás Part V. Computational Models of Tissue Morphogenesis 20 Large-Scale Parameter Studies of Cell-Based Models of Tissue Morphogenesis Using CompuCell3D or Virtual Leaf ..... 301 Margriet M. Palm and Roeland M.H. Merks 21 Simulating Tissue Morphogenesis and Signaling .............. 323 Dagmar Iber, Simon Tanaka, Patrick Fried, Philipp Germann, and Denis Menshykau 22 Elasticity-Based Targeted Growth Models of Morphogenesis ... 339 Patrick W. Alford Index ......................................................... 35i