Biomass conversion: methods and protocols / ed. by M.E.Himmel. - New York: Humana Press, 2012. - xiv, 275 p.: ill. - (Methods in molecular biology; 908) (Springer protocols). - Incl. bibl. ref. - Ind.: p.269-275. - ISBN 978-1-61779-955-6; ISSN 1064-3745  Место хранения:   05 | Сибирский институт физиологии и биохимии растений СО РАН | Иркутск

Оглавление / Contents

Preface ....................................................... vii Contributors ................................................... xi 1 Challenges for Assessing the Performance of Biomass Degrading Biocatalysts ....................................... 1 Michael E. Himmel, Stephen R. Decker, and David K. Johnson Part I Biomass Feedstock and Cellulose 2 Overview of Computer Modeling of Cellulose .................. 11 Malin Bergenstråhle-Wohlert and John W. Brady 3 Imaging Cellulose Using Atomic Force Microscopy ............. 23 Shi-You Ding and Yu-San Liu 4 Preservation and Preparation of Lignocellulosic Biomass Samples for Multi-scale Microscopy Analysis ................. 31 Bryon S. Donohoe, Peter N. Ciesielski, and Todd B. Vinzant 5 Coherent Raman Microscopy Analysis of Plant Cell Walls ...... 49 Yining Zeng, Michael E. Himmel, and Shi-You Ding 6 Immunological Approaches to Plant Cell Wall and Biomass Characterization: Glycome Profiling ......................... 61 Sivakumar Pattathil, Utku Avci, Jeffrey S. Miller, and Michael G. Hahn 7 Immunological Approaches to Plant Cell Wall and Biomass Characterization: Immunolocalization of Glycan Epitopes ..... 73 Utku Avci, Sivakumar Pattathil, and Michael G. Hahn 8 A Method to Evaluate Biomass Accessibility in Wet State Based on Thermoporometry .................................... 83 Bon-Wook Koo and Sunkyu Park Part II Plant Cell Wall 9 Cellulase Processivity ...................................... 93 David B. Wilson and Maxim Kostylev 10 A Simple Method for Determining Specificity of Carbohydrate-Binding Modules for Purified and Crude Insoluble Polysaccharide Substrates ........................ 101 Oren Yaniv, Sadanari Jindou, Felix Frolow, Raphael Lamed, and Edward A. Bayer 11 Bacterial Cadherin Domains as Carbohydrate Binding Modules: Determination of Affinity Constants to Insoluble Complex Polysaccharides .................................... 109 Milana Fraiberg, Ilya Borovok, Ronald M. Weiner, Raphael Lamed, and Edward A. Bayer 12 Affinity Electrophoresis as a Method for Determining Substrate-Binding Specificity of Carbohydrate-Active Enzymes for Soluble Polysaccharides ........................ 119 Sarah Moraïs, Raphael Lamed, and Edward A. Bayer 13 Single-Molecule Tracking of Carbohydrate-Binding Modules on Cellulose Using Fluorescence Microscopy ................. 129 Tu-San Liu, Shi-You Ding, and Michael E. Himmel 14 Bioprospecting Metagenomics for New Glycoside Hydrolases ... 141 Jack Gilbert, Luen-Luen Li, Safiyh Taghavi, Sean M. McCorkle, Susannah Tringe, and Daniel van der Lelie 15 Anaerobic High-Throughput Cultivation Method for Isolation of Thermophiles Using Biomass-Derived Substrates ................................................. 153 Scott D. Hamilton-Brehm, Tatiana A. Vishnivetskaya, Steve L. Allman, Jonathan R. Mielenz, and James G. Elkins 16 Assessing the Protein Concentration in Commercial Enzyme Preparations ............................................... 169 William S. Adney, Nancy Dowe, Edward W. Jennings, Ali Mohagheghi, John Yarbrough, and James D. McMillan 17 Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening .................................... 181 Stephen R. Decker, Melissa Carlile, Michael J. Selig, Crissa Doeppke, Mark Davis, Robert Sykes, Geoffrey Turner, and Angela Ziebell 18 Analysis of Transgenic Glycoside Hydrolases Expressed in Plants: T. reesei CBH I and A. cellulolyticus EI ........... 197 Roman Brunecky, John O. Baker, Hui Wei, Larry E. Taylor, Michael E. Himmel, and Stephen R. Decker Part III Lignins and Hemicelluloses 19 Structural Characterization of the Heteroxylans from Poplar and Switchgrass ..................................... 215 Koushik Mazumder, Maria J. Реñа, Malcolm A. O'Neill, and William S. York 20 Laser Microdissection and Genetic Manipulation Technologies to Probe Lignin Heterogeneity and Configuration in Plant Cell Walls .......................... 229 Oliver R.A. Corea, Chanyoung Ki, Claudia L. Cardenas, Laurence B. Davin, and Norman G. Lewis 21 Lignin-Degrading Enzyme Activities ......................... 251 Yi-ru Chen, Simo Sarkanen, and Yun-Yan Wang Index ......................................................... 269