Molecular markers in plants / ed. by R.J.Henry. - Ames; Chichester: Wiley-Blackwell, 2013. - xiii, 196 p.: ill. - Incl. bibl. ref. - Ind.: p.191-196. - ISBN 978-0-4709-5951-0  Место хранения:   06 | Якутский научный центр СО РАН | Якутск | Центральная научная библиотека Якутского научного центра СО РАН

Оглавление / Contents

Contributors ................................................... ix Preface ...................................................... xiii 1 Evolution of DNA Marker Technology in Plants ................. 3 Robert J. Henry Introduction ................................................. 4 Early Marker Technologies .................................... 4 Evolving Range of Applications of DNA Markers in Plants ..... 12 Applications ................................................ 13 Future Developments ......................................... 15 References .................................................. 15 2 Whole-Genome Sequencing for Marker Discovery ................ 21 Mark Edwards Sequencing Strategies ....................................... 22 Sequencing Technologies ..................................... 23 Epigenetic Markers .......................................... 31 Genome-Wide Selection ....................................... 32 Data Analysis Resources ..................................... 32 References .................................................. 33 Color plate section located between pages 34 and 35. 3 Amplicon Sequencing for Marker Discovery .................... 35 Timothy R. Sexton and Frances M. Shapter Introduction ................................................ 36 Background .................................................. 36 Maximizing Efficiency Through Sample Pooling ................ 38 Limitations of Amplicon-Based MPS ........................... 44 Bioinformatics .............................................. 51 Concluding Remarks .......................................... 52 Acknowledgments ............................................. 52 References .................................................. 53 4 Transcriptome Sequencing for Marker Discovery ............... 57 Susan Gillies Introduction ................................................ 58 Basic Approach .............................................. 58 Conclusions ................................................. 64 References .................................................. 64 5 Molecular Markers in Plant Improvement ...................... 67 Peter J. Prentis, Edward K. Gilding, Ana Pavasovic, Celine H. Frere, and Ian D. Godwin Introduction ................................................ 68 Plant Domestication and Traditional Breeding ................ 68 Application of Molecular Markers to Breeding ................ 70 Next-Generation Approaches to QTL Discovery ................. 75 Conclusion .................................................. 77 References .................................................. 78 6 Applications of Molecular Markers in Plant Conservation ..... 81 Maurizio Rossetto and Paul D. Rymer Introduction ................................................ 82 Traditional Approaches ...................................... 86 The Way Forward ............................................. 91 Conclusion .................................................. 95 References .................................................. 96 7 Molecular Markers for Plant Biosecurity ..................... 99 Andrew D.W. Geering Introduction ............................................... 100 The Present - PCR for Specific Diagnosis and for DNA Barcoding .................................................. 101 The Future - Next-Generation Sequencing Methods to Revolutionize Plant Quarantine Diagnostics ................. 105 Conclusions ................................................ 110 Acknowledgments ............................................ 111 References ................................................. 111 8 Molecular Markers for Harnessing Heterosis ................. 119 Gopala S. Krishnan, A.K. Singh, Daniel L.E. Waters, and Robert J. Henry Introduction ............................................... 120 Molecular Markers for Understanding the Genetic Basis of Heterosis .................................................. 122 Molecular Diversity and Heterosis — Molecular Markers for Predicting Heterosis ....................................... 123 Conclusion ................................................. 131 References ................................................. 132 9 Genetic Variant Discovery and Its Use in Genome Characterization of Agronomically Important Crop Species ... 137 Stéphane Deschamps and Matthew A. Campbell Introduction ............................................... 138 Sanger Resequencing ........................................ 140 Single Feature Polymorphisms ............................... 140 Next-Generation Sequencing ................................. 143 High-Density Genotyping using the Illumina Golden Gate Platform ................................................... 153 Genotyping by Sequencing ................................... 155 Genome Characterization and Haplotypes ..................... 157 Conclusions and Perspectives ............................... 159 References ................................................. 160 10 Future Prospects of Molecular Markers in Plants ............ 169 Reyazul R. Mir and Rajeev K. Varshney Introduction ............................................... 170 Molecular Markers: The Past ................................ 172 Molecular Markers: The Present ............................. 173 V Molecular Markers: The Future ........................... 175 Novel Approaches or Platforms for Plant Breeding ........... 180 Conclusions ................................................ 183 Acknowledgments ............................................ 184 References ................................................. 184 Index ......................................................... 191