Computational methods for understanding bacterial and archaeal genomes / ed. by Xu Y., Gogarten J.P. - London: Imperial College Press, 2008. - xix, 473 p.: ill. (some col.). - (Series on advances in bioinformatics and computational biology; 7). - Ref.: p.397-466. - Ind.: p.467-473. - ISBN-10 1-86094-982-7; ISBN 978-1-86094-982-1; ISSN 1751-6404  Место хранения:   021 | Институт цитологии и генетики CO РАН | Новосибирск | Библиотека

Оглавление / Contents

Preface ......................................................... v List of Contributors ......................................... xiii Acknowledgments ............................................... xix 1. General Characteristics of Prokaryotic Genomes .............. 1 Jan Mrázek and Anne 0. Summers 2. Genes in Prokaryotic Genomes and Their Computational Prediction ................................................. 39 Rajeev K. Azad 3. Evolution of the Genetic Code: Computational Methods and Inferences ................................................. 75 Greg Fournier 4. Dynamics of Prokaryotic Genome Evolution ................... 99 Pascal Lapierre 5. Mobile Genetic Elements and Their Prediction .............. 113 Morgan G.I. Langille, Fengfeng Zhou, Amber Fedynak, William W.L. Hsiao, Ying Xu and Fiona S.L. Brinkman 6. Horizontal Gene Transfer: Its Detection and Role in Microbial Evolution ....................................... 137 J. Peter Gogarten and Olga Zhaxybayeva 7. Genome Reduction During Prokaryotic Evolution ............. 153 Francisco J. Silva and Amparo Latorre 8. Comparative Mechanisms for Transcription and Regulatory Signals in Archaea and Bacteria ........................... 185 Agustino Marténez-Antonio and Julio Collado-Vides 9. Computational Techniques for Orthologous Gene Prediction in Prokaryotes ............................................ 209 Maria Poptsova 10. Computational Elucidation of Operons and Uber-operons ..... 233 Phuongan Dam, Fenglou Mao, Dongsheng Che, Ping Wan, Thao Tran, Guojun Li and Ying Xu 11. Prediction of Regulons Through Comparative Genome Analyses .................................................. 259 Zhengchang Su, Guojun Li and Ying Xu 12. Prediction of Biological Pathways Through Data Mining and Information Fusion .................................... 281 Fenglou Mao, Phuongan Dam, Hongwei Wu, I-Chun Chou, Eberhard Voit and Ying Xu 13. Microbial Pathway Models .................................. 315 Siren R. Veflingstad, Phuongan Dam, Ying Xu and Eberhard О. Voit 14. Metagenomics .............................................. 345 Kayo Arima and John Wooley References .................................................... 397 Index ......................................................... 467